Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs10575258 chr3:118499599 TCTTA/T 1.13E-5 404 14.07 17.92 2.7 KM Plot
STAD rs10584007 chr3:118501799 CACTT/C 1.14E-5 405 14.2 17.43 2.7 KM Plot
STAD rs10587017 chr3:118480482 TCTC/T 1.13E-5 405 14.13 17.92 2.7 KM Plot
STAD rs10792430 chr11:64147114 T/A 1.1E-5 397 14.27 15.87 7.47 KM Plot
STAD rs10831214 chr11:94097210 A/G 4.54E-5 405 14.67 13.6 7.27 KM Plot
STAD rs10846648 chr12:124783972 C/T 2.26E-5 393 14.97 13.92 9.18 KM Plot
STAD rs10846649 chr12:124783981 G/A 2.26E-5 393 14.97 13.92 9.18 KM Plot
STAD rs10846650 chr12:124783986 T/G 2.26E-5 393 14.97 13.92 9.18 KM Plot
STAD rs10916109 chr1:227435491 G/A 0 405 14.25 14.67 1.48 KM Plot
STAD rs10922166 chr1:197080036 G/C 1.2E-7 406 4.02 17.05 14.07 KM Plot
STAD rs10922169 chr1:197101105 T/C 1.2E-7 406 4.02 17.05 14.07 KM Plot
STAD rs1093464 chr3:117726256 C/T 1.04E-7 403 1.93 17.92 13.97 KM Plot
STAD rs10944453 chr6:90312863 C/T 3.13E-5 397 13.97 17.03 2.73 KM Plot
STAD rs111369971 chr1:45950869 G/GT 3.57E-5 390 13.53 17.43 9.03 KM Plot
STAD rs111387189 chr1:227436140 C/T 0 405 14.25 14.67 1.48 KM Plot